galaxy-skills
galaxyproject/galaxy-skills
A comprehensive collection of agent skills and instructions for developing, converting, and integrating tools and workflows within the Galaxy bioinformatics platform.
7 12MITUpdated 2026-07-28
82
GreatOverview
This repository supplies a structured suite of AI agent skills tailored for the Galaxy Project ecosystem. It enables assistants to handle complex tasks such as translating Nextflow pipelines into Galaxy tools, authoring User-Defined Tools (UDTs), managing UseGalaxy ToolShed revisions, and working with dataset collection manipulations and workflow reporting templates.
Capabilities
- ▸Nextflow to Galaxy pipeline conversion
- ▸Galaxy tool development and Planemo testing
- ▸User-Defined Tool (UDT) authoring and validation
- ▸Dataset collection manipulation using native tools and Apply Rules DSL
- ▸Galaxy integration via JupyterLite and MCP
- ▸UseGalaxy tool management and lockfile linting
Best for
Converting Nextflow processes and workflows into Galaxy equivalents, Developing, testing, and updating Galaxy tool wrappers and User-Defined Tools, Interacting with live Galaxy instances via Model Context Protocol (MCP) and BioBlend, Restructuring and transforming Galaxy dataset collections reproducibly
Works with
Claude CodeCursorGitHub CopilotOpenCode
Evoa Score breakdown= Σ (score × weight)
82Task usefulness20%100 → +20.0
実タスクにどれだけ役立つか（機能の豊富さ・用途の明確さ）。 — AIによるcapabilities/use-cases解析
Code quality15%90 → +13.5
実装・指示の品質。 — AIによるSKILL.md/README解析
Maintenance15%100 → +15.0
リポジトリがどれだけ活発に保守されているか。 — GitHub 最終push日時の新しさ
Documentation12%31 → +3.7
ドキュメントの充実度・分かりやすさ。 — README/独自要約の情報量
Security15%80 → +12.0
危険・不審な挙動が無いか。 — AIによるセキュリティレビュー
Originality10%95 → +9.5
ありふれたラッパーではない独自性。 — AIによる独自性判定
Popularity8%38 → +3.0
コミュニティの採用度。 — GitHub Stars/Forks（対数スケール）
Compatibility5%100 → +5.0
対応AIエージェントの広さ。 — AIによる対応エージェント判定
Weighted total81.8 / 100
ライセンス不明/制限あり（Red）のSkillは総合スコアに0.85倍の補正を適用します。 ランキングはこのScoreのみで決まり、広告で変わりません。 算出方法の詳細 →
Security considerations
Interacts with external Galaxy instances, tool sheds, and local execution tools; ensure secure API keys and proper sandboxing when running automated deployment or testing scripts.
Categories
Summary and analysis are original content generated by AI Skills Rank. The skill's source text is not reproduced here — view it on the linked repository.